Hello i was wondering if someone could help me in building a matrix like this:
(i have two sets of uniprot accession numberes from two different species)
species 1 | ||||||
species 2 | P08865 | P80404 | P32754 | P49189 | ……… | |
P16885 | ||||||
Q05823 | ||||||
O15528 | ||||||
Q02218 | ||||||
……. |
i want to pull out all the fasta sequences using these accession numbers and do a pairwise comparison of each sequence of both the species. The matrix values are the sequence identity (or E values like in BLAST output)...
I would appreciate any help/comment from community members.
Thank you
nar