Hi all

I am working in a plant genome and I have only the reference sequence.

If i am interested in getting the promoters and TSS sites in this sequence, I should either get it in the form of a GFF file, so that i can view it or I should be creating a GFF file

I can predict the promoters throught various softwares, now how to get a GFF file. I tried copying the output of the predictors in a delimited text text reader and then connected it to a GFF reader. But it displays an error saying start not found.

so the solution should be:

1. the raw output should be parsed and then written to a GFF file using GFF writer

2. is it possible to get the promoter/TSS prediction tool in pipeline pilot.

PLS EXPLAIN