Dear all,

I m using pipeline pilot to run some chamm dynamics (heat, equi then simulation) followed by a longer Namd simulation (only production)

As my systeme have pore than 9999 residues, the pdb file generated by the 'Namd script' is wrong (without hexadecimal code) and I cant follow so far.

So i m looking for a solution to change the pipeline pilot script -to take in count large systems- or another scripts that can extract 1) a good pdb/coor file from a .dsv file 2) a good pdb/coor file from a dcd file.

sincerely,

alain