Name: BioByte CLogP-4.3 SOAP Service
Author: Rahim Lila
Version: 2.0
Created: 11/2004
Modified: 08/2007 - updated components; did not test.
Purpose: This example demonstrates how to SOAP wrap BioByte CLogP and integrate it in Pipeline Pilot.
Requirements: Chemistry Collection, Java SDK 1.4.1 or higher, Apache Tomcat 4.2 or higher, BioByte CLogP-4.3
Limitations: This component has not been tested with PP 6.1
Keyword: BioByte, clogp, logp, SOAP, webservice
Contents: BioByte_CLogP.xml, BioByteCLogPWebservice.war
Installation:
1. Install BioByte CLogP software according to manufacturer instructions.
2. Install Apache TOMCAT Web server (no need to install Axis). See Pipeline Pilot Online Help, under Administration Guide-->SOAP Servers-->JAVA, for detailed instructions.
3. Place GoldWebservice.war into TOMCAT_INSTALL_FOLDER/webapps.
4. In a command window, Create an environmental variable. For example, in BASH (Unix):
export JAVA_OPTS="-Dcom.biobyte.dir=/home/scitegic/clogp-4.3 -Dcom.scitegic.temp.folder=/tmp"
Make sure you set "com.biobyte.dir" to be the absolute path of the BioByte folder (BB_ROOT) and "com.scitegic.temp.folder" to a temp folder.
Note: You may want to have JAVA_OPTS created Permanently. On Unix it can be done in a startup/boot script.
5. Start Tomcat in the same command window by using: TOMCAT_INSTALL_FOLDER/bin/startup.sh (Unix)
6. Verify AXIS and TOMCAT are properly configured by navigating to http://
7. Drag the BioByte_CLogP.xml file into your Pipeline Pilot client.
8. Then make sure that the SOAP endpoint on the Run Gold component is pointing to your SOAP server.
See below:
change from : http://localhost:8080/BioByteCLogPWebservice/services/CLogP
change to: http://
9. Everything should be in place.....just Run the protocol.
