Hello,
I am trying to export my model from material studio to VMD and MOE through exporting in .pdb but my coordinates are changing. My structure is not the same as it was in the material studio and it is not showing the periodic boundary. Not only that if i export in .pdb and again import that .pdb file in material studio, the same problem is coming. I am attaching the image of my export model and import model for better undersatnding the problem. Also i am not able to export this in .mol and .mol2 file format, it is saying "The mol2 exporter does not support bonds that extend beyond the asymmetric unit". So how can i export my model without changing it.
Thanks&Regards,
Abdul.

I am trying to export my model from material studio to VMD and MOE through exporting in .pdb but my coordinates are changing. My structure is not the same as it was in the material studio and it is not showing the periodic boundary. Not only that if i export in .pdb and again import that .pdb file in material studio, the same problem is coming. I am attaching the image of my export model and import model for better undersatnding the problem. Also i am not able to export this in .mol and .mol2 file format, it is saying "The mol2 exporter does not support bonds that extend beyond the asymmetric unit". So how can i export my model without changing it.
Thanks&Regards,
Abdul.