Create Peptides:
Running from Pipeline Pilot client, this protocol takes an input FASTA sequence file containing peptide sequences and generates a peptide structure PDB file for each sequence.

Each pdb file name is taken from the string in each sequence’s header line. Only alphanumerical characters should be used in the sequence header line (after the “>”). Note that each peptide sequence cannot extend to more than one line.

This protocol is compatible with PP 7.5.2 and DS 2.5. The protocol is created by embedding the DiscoveryScript “Create peptides” into a PP component, for the purpose of running the job from the Pipeline Pilot client. The DiscoveryScript “Create peptides” is at:

https://community.accelrys.com/message/1543