Dear All Friends,

I wonder could anyone advice on how to analysis the results of a protein after subjected to "stimulation\calculate energy" protocol?

I have the data of different proteins with similar structure and I got different energy for each parameter, i wonder how should I make full use of the data calculated, eg:

if i have 2 proteins with following results, how should i analysis it?

a) Potential energy : (-1000 vs -3000 kcal/mol)

b) Van der waals energy : (-1000 vs 1000 kcal/mol)

c) Electrostatic energy : (-1000 vs -3000 kcal/mol)

d) RMS Gradient : (1000 vs 100 kcal/ (molxA)

Pls advice and appreciate your help a lot. thank you

Mai