In previous versions of Solidworks, after running Compare Geometry you could check "save parts on exit" and then when closed the analysis it would save the bodies into a new part.  So you would have a new part with color-coded bodies in named folders...Common Bodies, Material Added, and Material Removed.  In Solidworks 2016, I have only been able to save the bodies if I select one of the 2 part models it was comparing and save them into that part model...which is something that I very much DO NOT want to do.  Is there some way to get it to save the bodies into a separate file, like it did before?  And if not, then Solidworks...please....BRING THAT ABILITY BACK!!!  Just add the option to "save bodies to new file".