i have erased some of my image that is confidential to my workplace. but it shows what the problem is. note #1 is set to the flag note bank. the flag attached in the section view is linked to the flag note bank as well. created with a balloon and checking the flag note bank box. but they are visually different sizes. but if i click either they say they are not. is this a known issue or is there something i do can to work around this issue but still get the functionality of the flag note bank? see my screenshots of the settings for each. 

the balloon and the note itself are shown.