I'm looking for the best implementation of inputing a compound or list of compounds and breaking them down into fingerprints or structural features.

Current plan:

1. Input is an sdf file
2. "Molecular Fingerprinting" component is used to breakdown compounds into fingerprints
3. Output to table

Looking for suggestions about:

1. best "Type" of molecular fingerprinting methods for building SAR
2. examples of other people have implemented theses feartures

Question:

• In the Help, it appears MDLpublickeys are only for 166 of the 960 keys available.  Is this true and where can I get the complete list of keys and what there identities mean?

Thanks for any help!

-Jeff