Name: Similarity Heat Map and MDS Map
Author: Stéphane Vellay
Version: 1.2
Created: 12/2008
Purpose: This example reports a similarity heat map and a MDS map of spectra
- Calculates a similarity measure for each input spectrum with each of the other input spectra
- Creates a Heat Map plot of the similarity matrix
- Performs multidimensional scaling (MDS) analysis using R
- Displays the spectrum in a Flash XY Chart that allows you to interactively select some spectrum and a XY Chart with a rich tooltip allowing you to see the spectra before selection
Requirements:
- Pipeline Pilot 7.5
- Analytical Instrumentation Collection
- R-statistics Collection
- Reporting Collection
Keyword: spectrum similarity mds heat map report interactive
Contents:
- Similarity Maps - Data Connector.xml
- Similarity Maps - Tooltip and Popup.xml
- Utilities/Spectrum Viewer.xml
Installation:
1. Unzip the archive
2. Import the folder in Protocol/Web Services
3. Run one of the protocol 'Similarity Maps' protocol from the Web Port