I recently read:
Tallapragada, K.; Chewning, J.; Kombo, D.; Ludwick, B., Making SharePoint(R) Chemically AwareTM. Journal of Cheminformatics 2012, 4 (1), 1.
http://www.jcheminf.com/content/4/1/1
The article describes a methodology for integrating Microsoft SharePoint, Accelrys Pipeline Pilot and Accelrys JDraw. Has anyone used this methodology or variants for integration of Pipeline Pilot with SharePoint?