in a mapping experiment:

1. Can we get the number of repeats or any other genomic elements in a genome after mapping?.

2. How do we get information about mapped bases, fully mapped reads, partially mapped reads, repeatedly mapped reads, unmapped reads, mapping depth, rate of nucleotide mismatches

3. What do the terms numQCOK and numPCRDuplicates mean in the mapping statistics

4. How do i link the gene IDS obtained in a mapping experiment to gene ontology. I would like to view a pie chart that displays, what percentage of genes were involved in a given function, biological process

5. How can i get the deletions and its frequency, in a mapping experiment

6. How do i do EST mapping.

7. Is it possible to identify miRNA using mapping techniques?