Name: Peptide Structure to Sequence

Author: Ian Kerman

Version: 1.0

Created: 12/2009

Purpose: This component takes in a peptide structure and outputs the peptide's sequence. The component is compatible with any type of molecular data format that can be read by Pipeline Pilot and does not require 2D or 3D coordinates. Also included is an example protocol and data set.

Requirements: Pipeline Pilot 7.0 or later
Chemistry Collection

O/S: Windows and Linux

Limitations: None Known

Keyword: peptide sequence structure substructure

Contents: DeterminePeptideSequence.xml, SequenceFromSMILES_Example.xml, PeptideSequences.xls

Installation:

1. Unzip the archive.
2. Import the DeterminePeptideSequence component into your user tab in the Pipeline Pilot client by dragging and dropping it in the Explorer window.
3. Copy PeptideSequences.xls to your Pipeline Pilot user folder.
4. Open the SequenceFromSMILES_Example protocol.
5. Run the protocol.