Hi,

I'm having a problem creating a pharmacophore to represent a set of compounds using the Common Feature Pharmacophore Generation protocol. The test set of data is a .sd file with coordinates for 20 compounds; whenever i run the protocol it produces a pharmacophore based on 9 of the compounds, but the log file gives the following for the other 11:

WARNING: no cpd file for *compound name*.

*compound name* will be ignored by HipHop.

I can't see anything wrong with the .sd file, which I've attached in case I've missed something. The only parameter of the protocol I'm changing is setting conformation generation to none, as they are real coordinates.

Any help would be greatly appreciated,

Thanks

Ashley