Name: Molecule Similarity Heat Map and MDS Map
Author: Stéphane Vellay
Version: 1.0
Created: 2/2009

Purpose: This example reports a similarity heat map and a MDS map of molecules. Made after a user's request after that other protocol

* Calculates a similarity measure for each input molecule with each of the other input molecule
* Creates a Heat Map plot of the similarity matrix
* Performs multidimensional scaling (MDS) analysis using R and displays the molecule in a XY Chart that allows you to see them with a tooltip and select one

Requirements:
* Pipeline Pilot 7.5 or later
* R-statistics Collection
* Chemistry Collection
* Data Modeling Collection
* Reporting Collection

Keyword: chemistry molecule similarity mds heat map report interactive

Contents:
* Chemistry Similarity Heat Map and MDS Map.xml
* Utilities/Molecule Viewer.xml

Installation:

1. Unzip the archive
2. Import the folder in Protocol/Web Services
3. Run the protocol 'Similarity Heat Map and MDS Map'