Hi
The protocol titled "search gene SNPs" in the sequence analysis protocols/query online databases seems to have a bug. In the SNP report component, the rename properties looks for a field known as "CONTIGPOS" [contig position], where the field is empty and hence nothing to parse. Because of which, we dont get an SNP report. I tried to look in to that file and change the code to LOOKUP instead of contigpos and now i get the SNPs correctly annotated. I hope what i have done is right, can anyone try out the protocol and let me know. Even the appropriate reporting element corresponding to the contig position needs to be modified
Thanks