Hi,
Simulations are performed using the MARTINI force field.
Frist, 300 polyethylene oxide (PEO) molecules are randomly positioned in an initial periodic box of size 51 angstroms/size.
Second, geometry optimization are performed, the parameters are listed below:
---- Geometry optimization parameters ----
Algorithm : Smart
Convergence tolerance:
Energy : 0.001 kcal/mol
Force : 0.5 kcal/mol/A
Maximum number of iterations : 10000
External pressure : 0 GPa
Motion groups rigid : NO
Optimize cell : NO
---- Energy parameters ----
Forcefield : PEO-W
Electrostatic terms:
Summation method : Ewald
Accuracy : 0.001 kcal/mol
Buffer width : 0.5 A
van der Waals terms:
Summation method : Bead based
Truncation method : Cubic spline
Cutoff distance : 12 A
Spline width : 1 A
Buffer width : 0.5 A
The .txt show that " WARNING Convergence criteria are not satisfied. Calculation did not reach convergence."
If ignoring this, and continuing performing a dynamics simulation, the .txt show that "Dynamics calculation - Aborting dynamics. An unphysical integration step (>100 Angstroms) has been detected. Try reducing the time step or
relaxing the structure first."
The initial box and force field files are in the annex.
I need some assistance.