Dear all,
I have build a structure as you can see in attach figure. For building this structure I did below steps respectively:
1- Building crystal.
2- Building a PE chain.
3-Copping this chain in to crystal.
4-changing it position to desire position.
5-Using Amorphous cell construction, packing task 3D amorphous structure was build while the first chain was still in desire position of step 4.
6-A graphene sheet was copied to this resulted structure.
7-I changed its position as you can see in the figure.
8-Finally I attached the polymer chain a graphene sheet.
But I have problems with this structure:
1-When I use geometry optimization task of Forcite module the final equilibrated structure is changed (figure2).
2- It is not possible dynamic run on equilibrated structure.
3- Also I am going to convert this structure in to coarse-grain but it again change (figure3)
I think my step was not true for creation a stable structure!!!???!!!
I will be appreciated if help me with your suggestions.
Regard
SJN