Hi,

I am running COSMOmic simulations of molecules as they permeate through a lipid bilayer and am interested in looking at how the molecule is oriented in the different layers in COSMOmic. I.e I am looking for a way of writing the coordinates of the molecule in relation to the .mic (or .pdb) file of each segment (that is to get information of how the molecule is oriented in each layer of the lipid bilayer). I have tried several different options for printing geometry output files, but none of them seem to be what I am looking for. Can you advise me how I can go about this issue?

Thank you in advance!
Kind regards,
Emma