Hi there,

i use Materials Studio 7.0, in purpose of simulating adsorption of lisozyme using 'Coarse Grain'. I have problem with transforming lisozyme into „balls”. I downloaded lisozyme pdb file from protein database and then used script from http(http://md.chem.rug.nl/cgmartini/index.php/downloads/tools/204-martinize -  martinize.py (version 2.4, August 18 2013).

The script transforms .pdb file into coarse grain, unfortunatelly MS has a problem – the program does not see any bonds between atoms(all atoms are separate points). Can anyone help me with modifying this script? Or maybe some user has access to lisozyme structure in 'Coarse Grain' working in MS?

(all files in annex)

Thanks,

Marcin