Hi, I am looking for software that can visually show how the atoms in two 3D structures (protein bound to a peptide) moved relative to one another after minimization. So I can superimpose the two structures and measure the differences, but they are between 1-1.5 angstrom on the high end, and 0.04-0.1 angstrom on the low end so a superimposed image could be used with different coloring for each protein/bound peptide, but not the easiest way to see all the changes. The other value I want to show visually is the change in the electrostatic and van der Waals scores, between the two protein/bound peptide structures, either separately or combined as an interaction energy score. Right now I am thinking of using a Heat Map, but all suggestions are welcome.

Thanks