Hi All,
I am a regular user of BIOVIA Discovery Studio and have been using the software for quite some time. I have a general query regarding the parameters used for identifying non-bonded interactions in protein–ligand complexes.
Specifically, I would like to know the default distance and angular criteria used by Discovery Studio for classifying common non-bonded interactions such as:
- Hydrogen bonds (e.g., donor–acceptor distance and angle range)
- Pi–Pi interactions (e.g., centroid–centroid distance, interplanar angle)
- Pi–cation, Pi–anion, salt bridges, and hydrophobic contacts, among others.
I have reviewed the software manual and the Help section thoroughly but could not find this specific information. I would greatly appreciate it if someone could point me to the relevant documentation or provide these parameters directly.
Thank you for your support.
Best regards,
Biswayan Ghosh