Hi
I had solvated and minimized protein structure for200 steps of steepest descent and 5000 steps of conjugate gradientabilised Further I had used heating cooling for 10000 steps. But Iam unable run equilibration dynamics.
I had selected the final conformation and copied pasted it in another window and is trying to run equilibration protocol. but i am getting charm log failed as error. wheras molecule has been typed with Charm.
please help me how to select and use the conformation file after heating cooling
divya