This protocol performs molecular transformations on a set of ligands based on rules defined using Daylight SMIRKS. A sample SMIRKS file is provided as an example.

How to use:
(1) Download the attachment.
(2) Open Discovery Studio 2.0 client
(3) In the protocol explorer panel, right click at your folder and import the enclosed xml file (Molecular Transformations using SMIRKS.xml)
(4) Double click on the protocol to open its parameter explorer.