Hello, I am learning the usage of ZDOCK of discovery studio 2016, and I am studying the interaction between protein and protein, also I have another protein-RNA system to study, when I use ZDOCK to dock the protein and the RNA, there were some warning like this:
>  ZDock Warning: unknown atom type: O2' A setting rad = 1.9, charge = 0.0
> ZDock Warning: unknown atom type: O2' C setting rad = 1.9, charge = 0.0
> ZDock Warning: unknown atom type: O2' C setting rad = 1.9, charge = 0.0
> ZDock Warning: unknown atom type: O2' A setting rad = 1.9, charge = 0.0
> ZDock Warning: unknown atom type: P U setting rad = 1.9, charge = 0.0
> ZDock Warning: unknown atom type: OP1 U setting rad = 1.9, charge = 0.0
> ZDock Warning: unknown atom type: OP2 U setting rad = 1.9, charge = 0.0
> ZDock Warning: unknown atom type: O5' U setting rad = 1.9, charge = 0.0
> ZDock Warning: unknown atom type: C5' U setting rad = 1.9, charge = 0.0
> ....................
> and I read the help manual of the ZDOCK, and I can't find any information about RNA/DNA, so I want to know if ZDOCK can be used to dock protein and RNA/DNA? How to dock the protein and RNA/DNA without the warning?
> Thank you very much!
> Best wishes!