Extract protein poses from ZDock output and store them in a single mol2 file

Although the 'Analyze Docked Proteins' tool panel allows you to view poses and select their interfacing residues etc., it does not allow you to view more than one Full Docked Complex pose at a time.
This protocol takes the ZDock results and a list of poses and writes out a .mol2 file containing the protein complex for each pose. The resulting .mol2 file can be read back into a Table Browser window in Discovery Studio. Within that Table Browser you will be able to display multiple complexes.
Note, this protocol is intended for use with DS 2.0.