HI
I want to calculate Electrostatic Potential of a nucleic acid ,and I followed the help tips, but the output files show as follows. And the atomic charges are all 0, and no Electrostatic Potential result, what is the problem?
program started on Fri Jun 11 2010
at 09:38:41
opening parameter file HY_model_1.prm
atom radii read from file
HY_model_1.siz
! Autogenerated DelPhi template file
reading pK style radius file
# of radius parameter records: 843
atomic charges read from file
HY_model_1.crg
! Autogenerated DelPhi template file
# of charge parameter records: 843
assigning charges and radii...
opening formatted file:HY_model_1.pdb
You are not reading from an objectfile! assuming having only molecules, and o
ne dielectric medium
number of atoms read in = 843
!!! WARNING: no radius record for O5' DA 1 1
!!! WARNING: no radius record for C5' DA 1 1
!!! WARNING: no radius record for C4' DA 1 1
!!! WARNING: no radius record for O4' DA 1 1
!!! WARNING: no radius record for C1' DA 1 1
!!! WARNING: no radius record for N9 DA 1 1
!!! WARNING: no radius record for C4 DA 1 1
!!! WARNING: no radius record for N3 DA 1 1
!!! WARNING: no radius record for C2 DA 1 1
!!! WARNING: no radius record for N1 DA 1 1
!!! WARNING: no radius record for C6 DA 1 1
!!! WARNING: no radius record for N6 DA 1 1
!!! WARNING: no radius record for C5 DA 1 1
!!! WARNING: no radius record for N7 DA 1 1
!!! WARNING: no radius record for C8 DA 1 1
!!! WARNING: no radius record for C2' DA 1 1
!!! WARNING: no radius record for C3' DA 1 1
!!! WARNING: no radius record for O3' DA 1 1
!!! WARNING: no radius record for P DA 1 2
!!! WARNING: no radius record for OP1 DA 1 2