Attached is a modified version of the Prepare Protein protocol which is available in Discovery Studio. In this version, the user specifies an Input Directory containing protein files and the protocol will process all the files in that directory (i.e. all files that match the specified Filter). For more details on the Prepare Protein protocol please refer to the DS help pages.

USAGE: This protocol can be launched from both the Discovery Studio and Pipeline Pilot clients. To install in Discovery Studio only, go to the Protocol Explorer, right-click over the folder you want to add the protocol to, choose Import, navigate to the location of the Prepare Protein (Batch).xml file and enter it as the File Name.

REQUIREMENTS: Discovery Studio Embedded Collection. Note, the Input Directory must be a path that the Server (not the Client) will recognize.

DISCLAIMER: This custom protocol is compatible with Discovery Studio 3.0/3.1 and Pipeline Pilot server versions 8.0.1/8.5.0.  It is provided "as is" and is NOT supported by Accelrys nor is it warranted for any purpose whatsoever. The user assumes responsibility for any malfunctions or bugs.