If you have a antibody sequence that has been annotated using the Annotate Antibody Sequence protocol and that sequence is linked to a structure, this script will enable you to color the protein display by the same colors of the annotations in the sequence window. The screenshot below illustrates the structure after executing the script.

To INSTALL: Unzip the attachment and ave ColorAntibodyStructureByAnnotations.pl to a local directory or location accessible from the Files Explorer

From the DS Client Files Explorer, right-click on the ColorAntibodyStructureByAnnotations.pl file and select Open With | Script Window then launch the script using the Run command from the Scripting toolbar.