I simulated the protein–ligand complex using AutoDock Vina, and the final output was analyzed for interactions. The complex was converted to PDB format using PyMOL, and the saved PDB file was then visualized in BIOVIA Discovery Studio to generate 2D interaction diagrams. However, I encountered issues during interaction analysis: hydrogen-bond interactions observed in the 3D view (in PyMOL) do not appear in the 2D interaction diagram in Discovery Studio. In addition, some double bonds in the ligand are not displayed correctly and appear as single bonds. I would appreciate guidance on how to resolve these issues.